Season 4

Complete listed story — includes the ending

1. Panopticon

The team adopts cover identities in the wake of Samaritan's rise. The Machine provides Reese the number of Ali Hasan, who has built a communications network VHF television antennas across New York that cannot be traced by Samaritan. When a street gang known as "the Brotherhood" forces Hasan to set up a network for them, Hasan attempts to assassinate one of the leaders via a bomb placed in a burner phone. In retaliation, the Brotherhood kidnaps Hasan's son; Reese hires Elias to recover him. Finch gives Reese a phone belonging to Hasan's invisible network. A Samaritan agent named Martine Rousseau arrives in New York to eliminate threats to Samaritan. The Machine leads Finch to a new hideout inside an abandoned Interborough Rapid Transit Company station. Reese, via his cover identity as an NYPD detective, is placed on the 8th precinct's homicide task force.

2. Nautilus

Reese and Finch work to save the life of Claire Mahoney, a talented young mathematician who is heavily involved in solving a nautilus -themed cryptographic puzzle, a recruitment tool used to find gifted minds. Claire is unaware that Silverpool, a private military firm is targeting her for stealing files associated with the game. Finch learns that Samaritan is running the game and attempts to warn Claire against continuing. Claire ignores him and completes the game; she is held at gunpoint by Silverpool operatives who force her to hand over the stolen documents, only to be shot dead by snipers. Samaritan recognizes Claire as an asset, while Claire's documents expose Silverpool's atrocities, thereby eliminating a potential competitor to Samaritan. Finch shows Reese and Shaw the team's new hideout.

3. Wingman

The Machine's next number, wingman Andre Cooper, is discovered by Fusco to be preparing to testify against former mob associates who are now targeting him. Reese and Shaw rescue Fusco and Cooper from the mobsters' captivity. Finch and Root infiltrate a black market for weapons sales. Root subdues a group of Latvian gang members buying an AT4 anti-tank weapon; she and Finch uncover the mob's stash of money and weaponry, which they decide to use for their own work.

4. Brotherhood

Reese is assigned to the case of a drug deal gone bad between a gang of Armenians and "The Brotherhood", who were introduced in " Panopticon ". The team's latest numbers belong to siblings Malcolm and Tracie Booker, who stole the drug money from the scene to bail their imprisoned mother out of jail. While Reese works with a DEA agent to protect the kids, Finch consults Elias about the Brotherhood's elusive leader Dominic. Shaw abducts an injured Brotherhood soldier, nicknamed "Mini" ( Winston Duke ), from the scene of the drug deal. The DEA agent is revealed to be a mole working for Dominic, who leaves Reese and the kids to face a Brotherhood assault. Fusco saves Reese, but Malcolm tries to make a deal with Dominic's right-hand man, Link ( Jamie Hector ), to protect his sister. Reese saves Malcolm, while Shaw forces Link to free Reese under the threat of burning the gang's heroin stash that Mini led her to. Shaw agrees to let Mini go, and he is picked up by Link. Mini reveals himself to in fact be Dominic and kills the DEA agent, ordering The Brotherhood to release the kids' mother as part of a campaign to induce gratitude.

5. Prophets

The Machine produces the number of Simon Lee ( Jason Ritter ), a brilliant political pollster and member of New York Governor James Murray's reelection campaign. Despite Lee's prediction, Murray loses, leaving Lee suspicious of the election result. The team discovers that the election upset is the result of vote rigging by Samaritan and that it wants Lee dead to tidy up loose ends. A series of flashbacks show the process Finch and Ingram went through to create The Machine. Reese is scheduled to attend therapy sessions because of his tendency to shoot people on the job. Root reveals to Finch that since Samaritan's activation, The Machine ceased talking, leaving her without guidance and afraid. Samaritan operatives led by Martine find the hotel where Lee is hiding. Despite being shot by Martine, Root manages to divert Samaritan's focus from Lee. Finch and Shaw produce fake data to convince Lee that his prediction was incorrect, causing Samaritan to disregard him. Reese tells his therapist why he feels compelled to save people, referring to his failure to save Carter. Greer and Martine discuss Samaritan's plans to gain political control. Finch indicates to The Machine his desire to communicate with it.

6. Pretenders

The team receive the number of Walter Dang ( Erik Jensen ), a worker at an insurance company. Finch has to travel to Hong Kong to present a paper at a conference. Walter is investigating the death of truck driver Abel Mindler, who apparently committed suicide. He gets dragged into a gang war between Elias and the unknown adversaries. It is later shown that Abel was smuggling high explosive weapons to the same gang. The gang abducts Walter for the location of the truck which Abel drove and then ditched, once he realized what he was smuggling; but the team intervenes. Elias meets with Dominic, and it is shown that Dominic was the mastermind behind the guns as he wanted to shift the balance of power. At the conference, Finch meets Elizabeth Bridges ( Jessica Hecht ), a small tech company owner, and the two bond. They are mugged on the way to the hotel. Discovering the thief's workplace, they go there, where Finch incapacitates him. As the conference ends, Finch pays him, revealing that he staged it to place a software on Bridges's laptop. As Bridges leaves, she calls a potential investor, who is revealed to be a Samaritan operative.

7. Honor Among Thieves

The latest number is Tomas Koroa ( Gerardo Celasco ), a wine dealer who is also an international thief. Shaw joins his gang. They rob a safe, which unexpectedly contains a deadly virus ( Marburg, or "MARV"). The other members try to kill Tomas. Shaw intervenes, but they take the vials. Shaw tracks the virus to a secure storage facility and realizes that two government operatives are doing the same thing. One of them is her former apprentice, Devon Grice ( Nick E. Tarabay ). Shaw and Tomas break into the storage facility, but are confronted by one of Tomas' teammates, who was behind the virus theft in the first place. They escape with the vials, but Grice apprehends them. He lets them go, deleting the CCTV video. Samaritan retrieves the video and starts repairing it. Root and Finch investigate software engineer Jared Wilkins, founder of new nonprofit OTPS, who received a $12 million grant from Governor Dawson (from " Prophets "). OTPS is an effort to give every New York student a tablet for educational use. Believing the tablets to be powered by Samaritan software, they plant a virus which ultimately destroys the building.

8. Point of Origin

The latest number is NYPD recruit Dani Silva ( Adria Arjona ). She is spying on her fellow recruits, though further analysis proves that Silva is not hunting them, but is instead already a cop from Internal Affairs, working undercover in the academy trying to expose a suspected mole. The mole is Silva's fellow recruit and friend, Alex Ortiz, who is acting on orders of the Brotherhood. Ortiz steals Silva's files from her handler and then murders him, framing Silva for the crime. Ortiz also steals files from the academy's commandant for Dominic. The group retrieves Ortiz from a local drug cartel in Spanish Harlem and escapes while Dominic has the cartel leader executed. Ortiz's confession exonerates Silva and improves Reese's standing in front of Internal Affairs. Elsewhere, Samaritan has processed the retrieved security footage (from "Honor Among Thieves"), producing a somewhat blurry picture of a person (Shaw), but identifies Tomas instead. In response, Martine is sent to identify the person, who interrogates Katya, Tomas' last remaining associate; and tortures Romeo for information on Shaw. The two make eye contact at the department store where Shaw works and recognize each other as agents of the opposing AI.

9. The Devil You Know

Martine engages in a gunfight with Shaw, who ultimately escapes thanks to Root. Martine learns that Fusco had stopped the truck that Root and Shaw used to escape, on a suspicion of Narcotics possession. Pretending to be a DEA agent, Martine questions Fusco about it, but he sees through the ruse and gives her a false lead. Reese and Finch deal with their latest number, Elias. Dominic gets many of Elias's people to turn on him in exchange for promises of expanded territory and power under The Brotherhood. Reese steps in to defend Elias and, during the process of evading Dominic, Anthony is captured and later killed in a suicide bombing. Greer and Martine deduce that Samaritan has a "blind spot" somehow caused by The Machine. Martine is given command of a group of Decima agents to hunt down Shaw. Meanwhile, Dominic has deduced that there is an extra-legal team helping Elias—he has two of the players figured out (Shaw and Reese), with the bankroller's place (Harold) still a large question mark. Elias vows revenge for the death of Anthony, and warns Reese to stay out of the way once that day comes.

10. The Cold War

To bring The Machine out of hiding, Samaritan showcases its strength by eliminating crime in New York City for a whole day. John finds out that Samaritan has learned how to deal with irrelevant numbers and has managed to prevent a series of crimes which would otherwise be taken care of by The Machine. Samaritan's actions leave Harold and his team with a difficult choice. When The Machine decides not to communicate with Samaritan, Samaritan changes course, bringing New York City to a halt by allowing crime to dramatically increase. When The Machine agrees, Root (acting as The Machine's voice) meets with Samaritan's representative, a young boy. It becomes clear that The Machine will not back down, while Samaritan is set on destroying it. Shaw leaves the Subway to help Root and the others while Samaritan engineers a stock market crash on Wall Street. A series of flashbacks show Greer's past as an MI6 agent. When Greer is assigned to kill a KGB agent, he discovers that the KGB agent is also an MI6 agent and that his deputy director, Blackwood, is a double agent. Overcome with anger, Greer kills Blackwood and severs his ties with MI6.

11. If-Then-Else

The team go to install software at the stock exchange that will stabilize the market. However, they are almost immediately intercepted by Samaritan operatives, who corner them in a room. Out of options, the team turns to The Machine, who in a matter of seconds provides a multitude of projections and outcomes in each. While doing so, it reflects on multiple chess matches it played and the lessons it learned with Finch in 2003. In a final simulation, The Machine projects a roughly 2% chance of survival and instructs the team to follow it. Shaw is stuck on a subway train with a stock market exchange manager with a security code to the exchange's server room. However, she is interrupted by a would-be suicide bomber who she kills in the first two simulations (and thus gets herself arrested) but talks down in the final and ultimate outcome. After sending the code to Root, she arrives as the two teams clash, opting to hold the Samaritan operatives off as Finch, Reese, Fusco, and Root escape. She traps them in the elevator, but Martine shoots Shaw multiple times before approaching her as the elevator doors slam to a close.

12. Control-Alt-Delete

During a mission to eliminate four suspected terrorists, ISA operatives (including Brooks and Grice from "Honor Among Thieves") eliminate three while the fourth, Yasin Said, escapes with his laptop. When Control requests access to the laptop's contents, Samaritan denies the request. Suspicious of Samaritan's actions, Control orders Brooks and Grice to make recovering the laptop their highest priority. But when they do so, Said escapes and the laptop self-destructs. Reese and Root, who have been hunting for Shaw, kidnaps Control. Root tortures Control for information on Shaw, but Control denies having any knowledge. Harold realizes that Control herself has been kept out of Samaritan's plans. Harold uploads a worm to one of the cellphones of the ISA operatives who came to rescue Control. Control tracks Yasin to Canada. He reveals that he won the Nautilus puzzle (from "Nautilus") and he wrote some software for an anonymous corporation. Control kills Yasin, but her actions leave a hint of doubt in her mind. The young boy acting as Samaritan's representative approaches White House and demands for a meeting with the President. Control visits the site of the shootout between Harold's team and the Samaritan operatives at the New York Stock Exchange.

13. M.I.A.

Root and Reese travel to the remote (and fictional) upstate town of Maple in search of Shaw. The two find a truck with a stretcher and medical equipment inside, leading them to a doctor; who was anonymously consulted for the job, but did not call the police since Maple has a history of job losses for those who ask too many questions. Root and Reese realize that Samaritan is experimenting with Maple as an "ant farm" to study human nature. After kidnapping and interrogating Maple's mayor Leslie Thompson, she leads them to the factory where Shaw was last seen, but Reese and Root instead find a secretary from the stock exchange, one of many innocent people who Samaritan is experimenting on with neural implants. Fusco and Dani Silva (from "Point of Origin") investigate The Machine's next number, one Arthur Weiss, a seemingly unsuspecting citizen revealed as a freelance assassin. They lure him into Silva's home and engage in a fight, with Silva shooting him to save Fusco, thus making her first kill. The Machine sends the team a coded message telling them to stop looking for Shaw. Elsewhere, Shaw is revealed to be alive and in Greer's captivity.

14. Guilty

Harold is summoned for jury duty in the trial of a man charged with murdering his wife, the former CEO of a cellphone development company. Harold provokes the judge to get rejected from the panel, but is brought into it anyway. He is seated next to a former schoolteacher named Emma ( Blair Brown ), who turns out to be The Machine's next number. The team initially concludes that she is a perpetrator, being coerced to "fix" the trial; but later realizes she is supposed to convince the jury to vote "guilty". Harold stalls to get a "not guilty" verdict while Reese and Zoe Morgan try to deduce the real story. The jury is sequestered in a hotel, and one of the jurors attempts to kill Harold, but Reese intervenes. The man is actually a plant by the real perpetrator, the new CEO of the company. The murder was to prevent the dead CEO from withdrawing an expensive product which was deemed to be unsafe. The new developments lead to dismissal of charges, and the real perpetrator is arrested. Fusco tells Reese to stop shutting him out. Zoe realizes there's a growing attraction between Reese and his counselor.

15. Q&A

Reese and Finch work to save the life of Anna Mueller, a software programmer at Fetch and Retrieve. She is being targeted because she expressed concern over the results VAL, a mobile app designed to aid users, is giving to people with depression that has resulted in suicides. Finch discovers a nautilus during the investigation and is contacted by Claire Mahoney (from " Nautilus ") who tells him that she had recovered some source code from Samaritan and wants him to use it on his laptop, but he's suspicious. Later, Claire reveals herself to be a Samaritan agent and leads Finch at gunpoint to a school run by Samaritan to convince him to join, but he refuses. Root rescues him from the agents and shoots Claire, who escapes and hands Finch's laptop to Greer. Back at Fetch and Retrieve, Calvin Mazer, the CTO, holds Fusco and the CEO Lauren Buchanan at gunpoint and reveals that he altered VAL's source code to target people with depression, gambling problems and debt, for the sake of the advertisers. Reese rescues them, and Calvin is arrested. The next day, Greer attends a board meeting at Fetch and Retrieve.

16. Blunt

Reese works to save the life of grifter Harper Rose ( Annie Ilonzeh ), whom Dominic targets after she steals a large amount of money from a legalized marijuana dispensary. Her actions result in the Parral Cartel killing two of Dominic's men guarding a money laundering operation. Dominic tracks down and interrogates her boyfriend Trey. Reese reaches out to Dominic and offers to return the money stolen by Harper in exchange for Trey and the hit being called off on Harper, but he refuses. After suggesting the plan to Reese and Finch, Harper decides to visit the Estonian mafia, mentions Dominic's money laundering operation, and lures them to Dominic's location while Reese rescues Trey. Fusco and the NYPD arrive and arrest the Parral Cartel, initially on possessing weapons illegally. Dominic and his crew are quickly released when he produces legal documents that show their guns are registered to his private security company. Dominic attempts to recruit Harper, who refuses, but he leaves the door open if she changes her mind. Root tries to sell an application she developed at The Machine's request to former POI Caleb Phipps, which she hopes will aid in trying to defeat Samaritan.

17. Karma

The Machine's next number is a psychologist named Dr. Shane Edwards ( Patrick Kennedy ), whose wife was murdered eight years earlier, an event which continues to haunt him. The team determines that Edwards has been studying the people who traumatized his clients and got away with it, then carefully crafting frame-ups in order to punish them for their crimes. When Wyatt Morris (Daniel Sauli), the man convicted of murdering Edwards' wife is released from prison, Edwards stages his most elaborate frame: to commit suicide and make it appear that Morris murdered him. In flashbacks to 2010, Harold is shown plotting revenge on Alicia Corwin, whom he believes is responsible for killing his collaborator, Nathan Ingram. As he is about to kill Corwin with a car bomb, he has an epiphany thanks to the intervention of The Machine. He uses that experience to persuade Edwards not to go through with his plan. Additionally, the team uncovers evidence that suggests Morris probably did not commit the crime. Harold and Reese discuss the fact that they may never know the full truth. In a session with his own therapist (Iris), Reese begins to open up about Jessica, the love of his life.

18. Skip

Reese and Fusco follow a bounty hunter named Frankie Wells ( Katheryn Winnick ) whose number has come up. She is trying to track down the man ( Ato Essandoh ) that killed her brother. Harper Rose ("Blunt") interjects herself into the cat-and-mouse case and manages to negotiate a resolution to a gunfight standoff between Reese and several other parties. Later, Harper tells Reese that Thornhill (The Machine) has been sending her texts. Finch resumes meeting with Elizabeth Bridges, whose number also came up. She is nearly ready to turn over a software package that contains the Trojan Horse which Finch had installed previously. He intends to activate it via a special device. Root, fearing that this will result in Finch being exposed and killed by Samaritan agents, foils the plan, at the cost of Finch and Elizabeth's growing mutual attraction. A doubly devastated Finch tells her to leave the team for a while. Iris confesses to Reese that she has fallen for him.

19. Search and Destroy

The Machine's next number is a brilliant developer and CEO named Sulaiman Khan ( Aasif Mandvi ), whose antivirus software is hijacked and he is framed for embezzlement. Samaritan and its operatives spend the episode trying to find and kill Khan, while the team tries to save him and determine what Samaritan is doing. They arrive at one of Decima's underground lairs in a forest, and discover that Samaritan is using Khan's antivirus software; Martine and her men arrive, resulting in Khan being captured and meeting Greer. He asks to "look Samaritan in its eyes", to which Greer responds by shooting him dead. Finch tells Reese that since The Machine's code cannot be searched for, Samaritan is employing Khan's software to attempt to locate The Machine.

20. Terra Incognita

The new number is a man named Chase Patterson ( Zachary Booth ). Finch, Root and Fusco are then to work on a case between the two gangs of Elias and Dominic while Reese works on Chase's case regarding the death of Chase's whole family. When Reese asks about the file regarding Chase Patterson, he finds out it was a case of Carter's ( Taraji P. Henson ). As Reese dives into the case, different flashbacks are shown with Carter doing similar investigation to what Reese is doing. As Reese reaches the final destination to the case, he discovers that Chase did not kill his parents and sisters. It was Gil, the doorman at their building, as well as Chase's half-brother. Gil then shoots Reese but Reese manages to shoot him back, killing him. In the process, Reese is trying to escape, the slow process of death is shown with Carter. Reese, now hallucinating and succumbing to hypothermia, talks to Carter about things that he wished he could have talked to her when she was alive. After Reese finishes talking with Carter, she disappears from his hallucination, and a car pulls up.

21. Asylum

Reese and Fusco race to find the next number, Carl Elias. They reach his hideout in a bank in Manhattan, but The Brotherhood arrive and capture them all. It turns out that Harper now works for Dominic. The Brotherhood tortures Elias for his intel, and Reese and Fusco for information on Harold. Elias tricks Dominic to kill his right-hand man, Link, to avenge the death of Anthony. In Washington, D.C., Control is interrogating a female Samaritan handler posing as a teacher, for a Samaritan's strategy called "The correction". Root receives a call from Shaw for help. Surprised, she and Finch follow The Machine's instructions to try to find Shaw, driving to a mental hospital, which is also Samaritan's base. Samaritan's operatives capture Finch and Root and give a choice to The Machine: to reveal its location, or both Root and Finch dies. Root kills Martine by breaking her neck. The Machine exchanges its location for Finch and Root's life. Greer takes a group to go in search for The Machine's location. Root tells Finch to reach that location before Samaritan in order to save The Machine. Shaw is last seen being driven away in a van.

22. YHWH

Samaritan begins a series of power outages throughout the country. Having been sent by the Machine, Harper releases Fusco, but is caught by Dominic. The Machine allows Root and Reese access to its God Mode (from "Zero Day" and " God Mode "). Fusco and the NYPD arrest Dominic and Elias. Control believes "the Correction" is Greer's plan for a terrorist attack on the Supreme Court, but it's actually a list, created by Samaritan, of people who need to be eliminated for the betterment of society, including Control. Dominic and Agent Grice are killed by Samaritan snipers. Elias is also shot. Root and Finch infiltrate Caleb Phipps' (from "2πR" and "Blunt") company to steal his compression algorithm and some high-capacity RAM chips, but Caleb willingly gives them to Finch. Reese regroups with Finch and Root at an electrical substation. They discover that the Machine spread itself over the power grid in boxes attached to electrical poles, and that Samaritan has been causing the power surges to destroy the boxes. Finch and Root starts downloading The Machine's core code to a briefcase contained with the compression algorithm and RAM chips. The team walk out with the briefcase to face more Samaritan operatives.